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Tagged: ancient, ancient DNA, database, dataset, DNA, haplogroup, mtDNA, samples, SNP, spreadsheet, subclade, Y-chromosome, Y-DNA
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June 23, 2020 at 9:35 am #30513Carlos QuilesKeymaster
Updated to version 2.01.14. I spent hours reviewing SNP calls for I2 subclades and adding positive, negative, and dubious SNPs. It was very interesting, but also very frustrating when I realized after spending so many hours during the weekend that I couldn’t find what I was looking for: a clear patrilineal connection between all Megalithic groups.
This post shows the result of that work:
Demic vs. cultural diffusion and patrilineal Megalithic societiesJune 26, 2020 at 6:35 pm #30560Carlos QuilesKeymaster
Updated to version 2.01.19, including negative SNPs for R, R1, R1a (up to Z283 and part of Z93), and some N1c and R1b.
I have also added a link to SNP calls from YLeaf v.2/v.2.2 in the haplogroup inference section of the website.July 5, 2020 at 2:08 pm #30720Carlos QuilesKeymaster
Updated to version 2.01.23, including the data published in Saag et al. (2020).
I have also added Y-DNA SNP calls for FASTQ data of Narasimhan et al. (2020) in the haplogroup inference section. For reference of individual files, check ENA project PRJEB32466.July 6, 2020 at 8:50 pm #30724Carlos QuilesKeymaster
Updated to version 2.01.24, including mtDNA data from Umbri published in Modi et al. Scientific Reports (2020).
Given the recently published data from Norht-Eastern Europe and the Cis-Baikal Neolithic and EBA, I’ve also decided to change the symbol of the questionable Chalcolithic N-TAT from Chekunova (2014), as well as the two Baikalic Neolithic R1a-M198 from Moussa (2016), to an “Unknown” instead of N1c and R1a, respectively. I am not ready to strike them out yet. I still hope they will retest, retrace, or recheck those samples and/or perform radiocarbon dates in the near future.July 7, 2020 at 10:14 pm #30725Carlos QuilesKeymaster
Updated to version 2.01.26, including update of Early Hungarians from Determination of the phylogenetic origins of the Árpád Dynasty based on Y chromosome sequencing of Béla the Third, by Nagy et al. Eur J Hum Genet (2020).
Also included in Google Drive Y-DNA SNP calls from Yu et al. (2020).July 21, 2020 at 9:55 am #31004Carlos QuilesKeymaster
Updated to version 2.01.35, including reported Initial Jōmon mtDNA from Mizuno et al. (2020), and YFull inferences of Béla the Third and the other published ancient individuals.August 2, 2020 at 1:57 pm #31292Carlos QuilesKeymaster
Updated to version 2.02.01, including recently reported samples from the Tollense Valley.
Updated to version 2.02.07, including Xiongnu samples and updates based on STRs (mainly to R1a-Z2125) of previously reported R1a samples.
Also included are two updated mtDNA subclades from mitogenomes published in Furtwängler et al. (2020).August 4, 2020 at 6:12 pm #31316Carlos QuilesKeymaster
Updated to version 2.02.07, including samples from A Paleogenomic Reconstruction of the Deep Population History of the Andes, by Nakatsuka, Lazaridis, et al. Cell (2020).August 11, 2020 at 8:20 pm #31425Carlos QuilesKeymaster
Updated to version 2.02.17, including new inferences from FTDNA (e.g. the Villanovan sample from Civitavecchia) and the Tagliente2 sample.August 20, 2020 at 9:06 am #31461Carlos QuilesKeymaster
Updated to version 2.02.24, including samples and mtDNA reported in Harney, Cheronet et al. bioRxiv (2020).
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